Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRC rs7979654 chr12:29432138 T/C 4.63E-8 526 40.8 39.23 6.07 KM Plot
KIRC rs79895050 chr6:165357367 C/T 2.32E-5 524 39.62 41.53 17.28 KM Plot
KIRC rs79916122 chr6:165368826 T/G 4.26E-5 519 39.23 44.57 15.83 KM Plot
KIRC rs80020499 chr4:16223131 T/C 3.3E-6 526 38.95 46.48 8.22 KM Plot
KIRC rs80052783 chr21:44304231 G/A 3.25E-13 523 42.75 32.42 3.37 KM Plot
KIRC rs80124066 chr21:47912913 A/G 1.72E-5 523 38.97 45.77 6.87 KM Plot
KIRC rs80273102 chr11:34773121 G/C 1.38E-7 523 40.28 36.92 3.3 KM Plot
KIRC rs80295687 chr11:34736111 C/A 1.08E-7 522 39.12 43 3.3 KM Plot
KIRC rs80330300 chr21:44259920 G/C 2.1E-7 516 41.13 31.75 7.18 KM Plot
KIRC rs80341800 chr6:2384568 C/T 6.73E-8 514 39.7 40.93 12.07 KM Plot
KIRC rs8062902 chr16:31711126 G/T 3.25E-6 527 20.62 41.73 40 KM Plot
KIRC rs8064674 chr17:54385898 G/T 2.3E-5 518 43.57 36.63 3.63 KM Plot
KIRC rs867624 chr1:161467837 A/T 4.49E-5 527 39.53 41.8 21.42 KM Plot
KIRC rs874236 chr2:67537804 A/G 1.9E-7 525 40.57 37.7 2.03 KM Plot
KIRC rs911723 chr6:165342208 T/C 3.95E-5 524 15.83 41.53 39.53 KM Plot